"Table 7.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP markers found to be associated with Endometriosis from the analysis of genome wide scan (GWS) data: NOT INFERTILE. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); 
rs#, dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for 
statistical significance from the GWS for single SNP markers (both T test and Permutation test p-values are displayed; see Example section) and for the most highly associated multi-marker haplotypes centered at the reference marker and defined by the sliding windows of specified sizes."																	


																	
												
 										ldstatv2	ldstatv2	ldstatv2	ldstatv2	ldstatv2	ldstatv4	ldstatv4	ldstatv4	ldstatv4	ldstatv4	singletype	singletype
									  									 												Single 		Single 
																														Genotype	Allele
Region										Single										Single										Likelihood	Likelihood
ID	Chr	B36 Position	RS#		Seq ID	Flanking Sequence	Marker		W03		W05		W07		W09		Marker		W03		W05		W07		W09		Ratio		Ratio
																				
98	1	220087702	10495181	4428	GAAAAACAATKTATTATCAGA	0.069		-		-		-		-		0.039		-		-		-		-		0.077		0.069
98	1	220092935	11118874	4429	TCTGCTCCACYGCCTATCTCA	1.278		0.574		-		-		-		1.210		0.556		-		-		-		0.896		1.255
98	1	220112069	6691170		4430	TAAAGATCCTKGCAGTTCTTT	0.698		1.590		0.609		-		-		0.631		1.605		0.611		-		-		0.504		0.701
98	1	220145183	2378494		4431	GCAGTGTTCTYTCATCACTCA	2.536		0.985		2.506		2.550		-		2.459		1.086		2.302		2.342		-		2.085		2.536
98	1	220157567	10863668	4432	ATGAGAGTCARAACCAAACTC	0.468		3.601		4.320		2.166		-		0.429		4.000		3.635		2.006		-		0.363		0.491
98	1	220169205	7554115		4433	GTTGCGCTGAYTTCAGGTTTG	4.847		3.990		3.540		-		-		4.772		4.246		3.100		-		-		4.719		4.908
98	1	220192151	12137323	4434	TACGGGGCCARTTCCACATAT	0.232		3.352		-		-		-		0.165		3.422		-		-		-		0.112		0.280
98	1	220249849	2800860		4435	TTGTTTAATAYGGATAGAACA	0.049		-		-		-		-		0.018		-		-		-		-		0.519		0.049
99	2	122755725	1344759		4566	TACAGACGGARGAGTTGATTA	0.032		-		-		-		-		0.000		-		-		-		-		0.054		0.059
99	2	122764499	13396216	4567	ACACATCTTARAAACAAATAC	0.030		1.710		-		-		-		0.000		1.738		-		-		-		0.478		0.030
99	2	122770055	12612483	4568	TATAGTCATAYAGATGAAGCA	1.707		0.973		0.969		-		-		1.647		0.973		0.947		-		-		2.617		1.707
99	2	122792918	11122897	4569	ACAAAACTGTRTCATTTTACA	0.100		1.386		3.158		2.546		-		0.075		1.508		2.745		2.323		-		0.060		0.100
99	2	122809398	1881893		4570	CTCTAGGACAYTACATTTGGT	1.457		2.694		3.506		2.926		2.551		1.346		3.102		2.909		2.553		2.309		1.151		1.457
99	2	122815563	10496579	4571	AGCAAACTGARGAACAGCAAA	2.554		3.120		4.093		3.566		3.466		2.473		3.350		3.153		2.853		3.018		1.943		2.554
99	2	122816017	10496581	4572	TCGGGTAACTRGTGAGTTGCT	4.765		3.153		4.285		3.734		2.530		4.684		3.431		3.392		3.231		2.347		4.141		4.765
99	2	122818658	12469494	4573	TATCATTTTCRTCTGCTTCCT	1.485		3.214		5.380		3.664		-		1.413		3.880		3.975		3.009		-		1.163		1.485
99	2	122832476	1453690		4574	CTACTCTGCCYGACTCCCATG	1.251		0.765		3.739		-		-		1.176		0.792		3.129		-		-		1.015		1.251
99	2	122850882	1320869		4575	GCTCCAGTTTRACCCTAGCCA	0.163		0.387		-		-		-		0.128		0.380		-		-		-		0.083		0.157
99	2	122853360	1919922		4576	TCATATCCTAYGCACTAGACC	0.178		-		-		-		-		0.134		-		-		-		-		0.036		0.149
100	3	12583045	2442802		4672	AAACTCATCTMATGTAATTCT	1.148		-		-		-		-		1.092		-		-		-		-		0.990		1.148
100	3	12591533	3773341		4673	TCTTAGCTGTRGGAGCTAGGA	0.469		0.479		-		-		-		0.402		0.455		-		-		-		0.830		0.469
100	3	12599070	15997		4674	CTGGCTCTTAYCTTTGATCTT	0.667		1.228		2.221		-		-		0.615		1.266		2.065		-		-		0.359		0.667
100	3	12610706	1532533		4675	AGGGATGAAGRTAAGAAATCC	1.150		3.662		3.543		1.993		-		1.116		3.719		3.198		1.825		-		0.792		1.150
100	3	12611255	1532534		4676	TTCTAAATCCKCACTACTATG	4.871		3.846		3.550		3.290		1.993		4.775		3.882		3.025		2.954		1.845		4.178		4.871
100	3	12630689	9809501		4677	CCAAGACTTTKGGCTCATATG	1.228		3.894		4.138		3.550		3.006		1.141		3.942		3.452		3.030		2.776		0.781		1.228
100	3	12643726	6792773		4678	CTAAACCATAYAAATTATTTC	1.507		1.067		4.855		3.541		3.936		1.462		1.095		3.946		3.084		3.211		1.231		1.507
100	3	12648275	11128607	4679	CCATGTGTCTRGTATACAGAC	1.507		1.507		2.003		4.390		-		1.409		1.409		1.819		3.413		-		1.231		1.507
100	3	12651113	9817675		4680	CAAGAATCCAYAATTATGTGA	1.507		2.202		2.036		-		-		1.427		2.195		1.852		-		-		1.231		1.507
100	3	12664858	6442322		4681	AAACACTAACRATTTCCACAC	0.751		1.838		-		-		-		0.699		1.835		-		-		-		0.425		0.752
100	3	12671288	11710163	4682	ACAACATTATRCACAAGTTTA	0.423		-		-		-		-		0.347		-		-		-		-		0.450		0.547
101	6	168687447	2180346		5136	CAACGGCAGAYGCTGTTAGGA	0.000		-		-		-		-		0.000		-		-		-		-		0.020		0.007
101	6	168695540	2144749		5137	CTATAATTTGRTTTAAGTCAG	2.008		2.342		-		-		-		1.918		2.443		-		-		-		1.572		2.018
101	6	168703401	10945513	5138	TTTCTCTGTARTCACCCTTAT	1.552		3.760		2.908		-		-		1.487		3.826		2.699		-		-		1.111		1.552
101	6	168706442	6455529		5139	AATCTTTCTCYTAAAAGCTCC	0.616		1.361		2.687		2.419		-		0.606		1.380		2.525		2.305		-		0.518		0.655
101	6	168710540	2342630		5140	CTAACCTCGCRTTTTTATAGC	2.678		1.768		2.710		2.054		1.385		2.588		1.791		2.553		1.975		1.364		2.466		2.666
101	6	168727218	4708751		5141	GCTCCCCAACYTCCTGCTGGC	0.239		4.020		2.184		1.474		1.380		0.195		4.190		2.051		1.435		1.357		1.108		0.239
101	6	168728405	11964985	5142	AGCACATCCAYCCCGGGACAG	5.077		4.123		2.900		1.694		0.825		4.987		4.476		2.705		1.679		0.838		4.494		5.077
101	6	168745262	9456232		5143	GTGGCTAAGAMAGTCTTGGTT	3.766		3.133		3.938		1.800		1.481		3.696		3.358		3.547		1.770		1.450		3.586		3.766
101	6	168760104	7761264		5144	GTTTCTCCCAYGACCTTTCAA	1.766		1.940		3.921		3.370		2.032		1.698		2.219		3.486		3.107		1.918		1.494		1.766
101	6	168762605	2342638		5145	TCTGTGCTCCYTGAGGTTGGC	3.080		1.885		3.796		3.621		1.811		3.017		2.164		3.406		3.270		1.707		2.775		3.080
101	6	168763978	12197584	5146	ATTTTAAAAAYGTCTCCTAAG	2.873		3.167		3.162		2.195		2.701		2.775		3.335		2.731		2.042		2.579		2.790		2.873
101	6	168765063	9283862		5147	TCCTGGTGCCYGGCAAGTCTC	0.915		2.943		2.227		2.937		2.898		0.835		2.949		2.084		2.726		2.659		0.679		0.915
101	6	168765804	16886236	5148	GATTGAGTCARCAAACCAAGG	1.748		0.905		4.473		3.292		2.597		1.658		0.932		4.003		3.077		2.349		2.210		1.748
101	6	168771092	9455679		5149	CCAGGTCTCCRGACACTCTGT	0.199		2.546		1.637		3.788		2.856		0.181		2.598		1.563		3.473		2.645		0.163		0.199
101	6	168775007	2342646		5150	ACCAGAAACCRTGTATGAAAA	0.735		1.404		3.135		2.864		3.082		0.714		1.406		2.834		2.718		2.917		1.166		0.735
101	6	168776885	2342647		5151	AGAATGATACKAAGTCCTGAG	1.245		2.298		2.619		2.052		-		1.190		2.382		2.457		1.973		-		1.274		1.245
101	6	168781519	4708481		5152	AAATCTCCAGYGCCCAGCTGC	0.823		4.915		2.606		-		-		0.782		4.900		2.449		-		-		0.455		0.823
101	6	168785425	911946		5153	TAAACTGCATRGAAAGTTAAA	0.030		0.484		-		-		-		0.000		0.502		-		-		-		0.108		0.030
101	6	168789015	6931082		5154	TCCAGGTTACRGGAAGGAAGC	0.169		-		-		-		-		0.143		-		-		-		-		0.111		0.169
97	7	4429121		13232858	5155	TAATGTGGGARAAAGAATTCA	0.237		-		-		-		-		0.192		-		-		-		-		0.109		0.237
97	7	4431724		13238627	5156	GTGATTACTGYCTGAAAGTTT	0.119		0.348		-		-		-		0.062		0.350		-		-		-		0.457		0.119
97	7	4436371		2158628		5157	TAAAATATCTRTACTACCCAT	0.607		0.936		0.556		-		-		0.582		0.960		0.545		-		-		0.649		0.607
97	7	4441231		314587		5158	TTTATTAAACYTAAGACTCTC	1.822		1.074		0.756		0.521		-		1.677		1.146		0.788		0.546		-		1.579		1.822
97	7	4443207		4723748		5159	TCTCCTGCACKGGCTTGGGCT	0.890		1.282		0.563		2.523		1.824		0.826		1.585		0.595		2.251		1.741		0.769		0.843
97	7	4443538		314583		5160	AGTCACTTTGYCTGCAAGGAC	1.736		1.282		2.708		2.522		2.714		1.617		1.404		2.333		2.212		2.398		1.492		1.736
97	7	4443550		314582		5161	TGCAAGGACAMCTTTGTATGT	0.290		1.243		3.442		3.376		4.031		0.249		1.297		2.785		2.736		3.365		0.257		0.290
97	7	4445114		7783362		5162	TAGATGATATRTAGATTAGAT	0.019		0.536		1.174		5.321		4.253		0.000		0.587		1.161		4.211		3.600		0.031		0.019
97	7	4445666		423854		5163	AAGAAGTTTCYGTCAATAGAA	0.324		1.098		1.990		3.057		7.885		0.294		1.099		1.779		2.520		6.301		0.343		0.309
97	7	4449442		6951056		5164	CTACTGTACTRTAAAATCTAA	1.822		1.116		2.890		7.907		6.349		1.657		1.211		2.446		6.155		5.301		1.593		1.838
97	7	4450383		172707		5165	CAAAGTGGAARCCTGCCTGGT	1.428		2.568		4.719		6.019		5.354		1.368		2.623		3.944		5.149		4.578		1.374		1.428
97	7	4461527		6958864		5166	ATGTAGGGGARTGCCTCCAAC	2.241		2.923		3.322		4.163		3.977		2.133		3.153		3.009		3.668		3.524		1.578		2.218
97	7	4464214		895710		5167	ACCTGAGATAYTCGCCCCTCT	2.145		1.914		4.540		4.176		-		2.112		2.086		4.122		3.752		-		1.496		2.077
97	7	4469915		1470539		5168	TATTCTCTCCMCAGCTCCATA	0.670		1.815		2.127		-		-		0.653		1.852		1.958		-		-		0.539		0.625
97	7	4474567		1466065		5169	TCATTCAATCKGATCCAAAGC	0.230		0.738		-		-		-		0.216		0.785		-		-		-		0.110		0.230
97	7	4480332		4720301		5170	TGGTGGCTCAYGCCTGTAATC	0.280		-		-		-		-		0.232		-		-		-		-		0.206		0.280
102	9	109236018	12342660	5425	CCTGAGTGCCYTAAACAACAG	0.000		-		-		-		-		0.000		-		-		-		-		0.081		0.000
102	9	109236689	10978854	5426	AAGAAGGTCAMATTCTCAGGT	0.634		0.245		-		-		-		0.535		0.224		-		-		-		0.466		0.634
102	9	109236850	2417791		5427	ACAGAAGGCTYTCATACATCT	0.314		3.018		2.399		-		-		0.277		3.222		2.237		-		-		0.291		0.299
102	9	109243828	7874117		5428	TGTTAGGCAGRGAGATTTCAT	4.894		2.821		2.354		1.679		-		4.742		3.011		2.231		1.627		-		4.250		4.894
102	9	109250069	1972384		5429	GAATAATCAGRACAATGAGCC	1.485		3.254		1.812		1.249		0.624		1.418		3.342		1.733		1.201		0.615		1.002		1.485
102	9	109250183	10978861	5430	TTGAGCATCTRCTGTGTACAT	2.870		3.073		2.233		1.160		0.982		2.777		3.389		2.079		1.144		0.937		2.207		2.870
102	9	109254168	10759237	5431	AACAAGTTTGRCCATGAGGAC	0.336		2.160		1.510		1.581		1.837		0.314		2.376		1.444		1.506		1.752		0.112		0.325
102	9	109257563	882942		5432	CTTTTAACTGMAGATACAGTC	1.940		1.464		0.727		1.343		1.330		1.854		1.496		0.706		1.295		1.308		1.607		1.940
102	9	109261165	1342321		5433	CTAGGAACTTYACTCCAACAA	0.998		1.252		1.684		1.043		-		0.934		1.224		1.568		1.054		-		0.541		0.998
102	9	109270991	10759238	5434	GGTCTGAGTARAATCAGGTTT	0.507		0.952		0.827		-		-		0.447		0.995		0.882		-		-		0.208		0.507
102	9	109271684	1819730		5435	TAAACAAAATRAACAAAACCC	1.029		0.595		-		-		-		0.980		0.595		-		-		-		1.412		1.010
102	9	109278182	17725250	5436	GGTCAATTCCRCGCACTGTCA	0.335		-		-		-		-		0.277		-		-		-		-		0.347		0.335
103	10	63500292	7090871		5508	ATAACTGGCAYTTCCCTTTGG	0.548		-		-		-		-		0.500		-		-		-		-		0.320		0.548
103	10	63510068	4948503		5509	AGATCTTCTGYGGCTCACATC	0.165		0.739		-		-		-		0.147		0.771		-		-		-		0.216		0.165
103	10	63513118	2278305		5510	ATGGTGCCCTRCTTTGTGAAC	0.373		2.771		2.712		-		-		0.350		3.167		2.369		-		-		0.150		0.373
103	10	63518662	9414761		5511	TGGTGGGAAGYTAACATTTAA	4.797		3.139		4.697		3.165		-		4.660		3.342		3.985		2.875		-		4.093		4.797
103	10	63526862	7916978		5512	TTGGCAAATAYCTCTTATCTT	2.280		2.739		3.656		3.111		-		2.191		3.004		3.321		2.842		-		1.583		2.280
103	10	63532640	10821956	5513	AGGCTGCATARTAATAGAACT	0.139		1.186		2.310		-		-		0.109		1.196		2.176		-		-		0.605		0.139
103	10	63552022	9415646		5514	TTGTGGTCTAKCTCTTCTTTT	0.824		0.666		-		-		-		0.750		0.669		-		-		-		0.838		0.824
103	10	63557721	750412		5515	TTTTCTTCCARTCTGGTTTGT	0.090		-		-		-		-		0.068		-		-		-		-		0.085		0.090
104	11	20626547	1617769		5594	TGCGTTGACAYGAACATCATA	0.265		-		-		-		-		0.242		-		-		-		-		0.081		0.265
104	11	20630443	2276433		5595	ACCAGTGGGARCCCATGACCT	1.265		0.972		-		-		-		1.199		1.028		-		-		-		0.851		1.265
104	11	20632221	17298481	5596	AGACATTCCTRTTATTTTTAG	0.730		3.301		2.629		-		-		0.660		3.319		2.230		-		-		0.615		0.730
104	11	20632829	2276432		5597	TTTGGCTTCTYTGCAGAGGCT	4.412		2.885		2.877		-		-		4.293		3.124		2.459		-		-		3.717		4.412
104	11	20636859	7127159		5598	AGCAAGCAGTRGTTTGACTTG	0.081		2.522		-		-		-		0.040		3.027		-		-		-		0.184		0.081
104	11	20638015	10466424	5599	CTGATCAGGTYAACCCAGAGG	0.370		-		-		-		-		0.334		-		-		-		-		0.144		0.371
105	12	22872528	2466889		5677	GTTTGGGTAARTACACTCTAT	0.549		-		-		-		-		0.500		-		-		-		-		1.096		0.549
105	12	22876418	17175003	5678	TATTAATCATYGGACTTCATG	0.436		2.103		-		-		-		0.372		2.383		-		-		-		1.639		0.436
105	12	22878730	2433644		5679	TCAGGAGAAGMACATGGGTAA	0.513		3.184		3.710		-		-		0.502		3.460		3.353		-		-		0.472		0.558
105	12	22879373	17175038	5680	GATTATTGTTKTCCAGGCAGT	4.588		2.530		2.638		2.508		-		4.448		2.722		2.454		2.350		-		3.745		4.588
105	12	22880649	2466887		5681	TGTGCTTATTYGGAGGAGGGT	0.608		2.381		1.719		-		-		0.550		2.811		1.611		-		-		0.395		0.608
105	12	22884532	7137690		5682	CCTTAAGGCTRCTCTGGTCAA	0.143		0.327		-		-		-		0.132		0.319		-		-		-		0.227		0.143
105	12	22886997	2433633		5683	CATGACACTCRTCATCTTCTA	0.254		-		-		-		-		0.226		-		-		-		-		0.509		0.254
106	20	55613281	8118279		6327	TGGCCTGGGCRTTTCCACAGG	0.250		-		-		-		-		0.199		-		-		-		-		0.079		0.250
106	20	55617366	6070180		6328	TTTCTACCCAYTGGTGGGACT	0.464		2.682		-		-		-		0.449		2.835		-		-		-		0.248		0.464
106	20	55618538	742724		6329	ATCGATGAGARTGAATGAATG	4.214		2.437		1.599		-		-		4.098		2.512		1.521		-		-		3.184		4.214
106	20	55624040	2073145		6330	TGGGGCCTCTYGGCTGCAGAA	0.366		2.412		-		-		-		0.302		2.750		-		-		-		0.177		0.366
106	20	55633032	2026763		6331	CCAAGTCTCCYTTCTACCAGG	0.236		-		-		-		-		0.190		-		-		-		-		0.464		0.236
107	21	46705737	2078203		6411	ACTGTACTGCRTTTGTTAAGG	0.288		-		-		-		-		0.268		-		-		-		-		0.088		0.288
107	21	46717234	1023355		6412	AGAACTTTCTKCTACGATGGG	1.351		0.862		-		-		-		1.249		0.893		-		-		-		0.755		1.259
107	21	46728784	2032110		6413	GCAACCACTAKCTGTATCTGA	0.310		3.801		4.257		-		-		0.253		3.964		3.659		-		-		0.450		0.310
107	21	46729013	718496		6414	CAGTGTTTCCMGTTTTTCAAT	4.278		3.498		4.524		4.257		-		4.182		3.734		3.903		3.732		-		3.782		4.681
107	21	46729924	7279991		6415	GAAAATCTTAYAGGAAGATTG	1.495		2.900		4.200		-		-		1.396		3.182		3.611		-		-		0.940		1.495
107	21	46746267	2839297		6416	TCAAGGGTTGYGAAAAATCTT	1.564		1.023		-		-		-		1.517		1.043		-		-		-		1.072		1.638
107	21	46755673	1029262		6417	TTAAAAAACARTATTATAAAC	1.933		-		-		-		-		1.863		-		-		-		-		1.308		1.933
